Package: anovir
Type: Package
Title: Analysis of Virulence
Version: 0.1.0
Authors@R: c(person("Philip", "Agnew", email = "philip.agnew@ird.fr", role = c("aut", "cre")),
            person("Jimmy","Lopez", email = "jimmy.lopez@ird.fr", role = c("aut")))
Maintainer: Philip Agnew <philip.agnew@ird.fr>
Description: Epidemiological population dynamics models traditionally
        define a pathogen's virulence as the increase in the per capita
        rate of mortality of infected hosts due to infection. This
        package provides functions allowing virulence to be estimated
        by maximum likelihood techniques. The approach is based on the
        analysis of relative survival comparing survival in matching
        cohorts of infected vs. uninfected hosts (Agnew 2019)
        <doi:10.1101/530709>.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Depends: bbmle, R (>= 2.10), stats4
Suggests: knitr, rmarkdown, stats, testthat
Collate: 'anovir-package.R' 'private_functions.R' 'nll_recovery.R'
        'nll_recovery_II.R' 'data_descriptions.R' 'main.R'
        'play_file.R' 'nll_functions.R' 'nll_frailty_correlated.R'
VignetteBuilder: knitr
URL: https://www.biorxiv.org/content/10.1101/530709v1
NeedsCompilation: no
Packaged: 2026-06-20 08:15:06 UTC; root
Author: Philip Agnew [aut, cre], Jimmy Lopez [aut]
Repository: https://philipagnew.r-universe.dev
Date/Publication: 2020-10-24 07:50:05 UTC
RemoteUrl: https://github.com/cran/anovir
RemoteRef: HEAD
RemoteSha: 80ffca0c6bebcc536d21d0982cd49c83f2226486